API

API#

Import eschr as:

import eschr as es

Make zarr files#

readwrite.csv_to_zarr(csv_path, zarr_loc)

Create zarr data structure from csv path.

readwrite.make_zarr(data, zarr_loc)

Create zarr data structure from a loaded dataset.

Run consensus clustering#

tl.consensus_cluster(adata, zarr_loc[, ...])

Run ensemble of clusterings and find consensus.

Make plots#

pl.smm_heatmap(adata[, features, smm_cmap, ...])

Make a heatmap of soft cluster memberships.

pl.umap_heatmap(adata[, features, ...])

Make UMAP plot colored by hard clusters and confidence scores.
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